The AI teammate for FlowJo users

Teach Bogi once, and it applies your workflow across every sample in your workspace.

Copy your gates to every sample just by asking.

Tell Bogi to apply your gates to every sample. It handles the shifted populations, the Ig flips, the percentile recalculations. You get your .wsp back, already gated.

Flow cytometry workspace with propagated gates across samples
Apply my gates to the rest of the samples in the workspace.

Reading gate hierarchy from template sample
Detecting per-sample differences across 48 FCS files
Writing gates to all samples with adjustments

workspace_gated.wspFlowJo workspace · 3.2 MB

Pull your workspace statistics in minutes.

Tell Bogi what statistics you need. It pulls them from every population across every sample and gives you a .pzfx file you can open directly in Prism.

FlowJo statistics extractor showing Prism export tables and graph preview
Get me the stats for all gated populations across every sample. Percent of parent and counts.

Parsing gate stats from .wsp
Organizing by sample and population for Prism

stats.pzfxPrism file · 84 KB

Run compensation in one go.

Tell Bogi to run compensation. It reads your FCS headers, matches your controls, and builds the matrix. Even when the parameter names don't match.

FlowJo statistics extractor showing compensation control channel mapping and compensation matrix
My single-stain controls have different parameter names than my samples. Can you match them and build the compensation matrix?

Reading parameter names from FCS headers
Mapping single-stain controls to corresponding channels

workspace_compensated.wspFlowJo workspace · 3.5 MB

Make publication figures ready to submit.

Tell Bogi how your figures should look. It generates all of them with the same formatting in one pass. Ready to drop into your manuscript.

FlowJo statistics extractor showing publication figure plots with consistent axes and gate overlays
Make publication figures for all 49 samples. Same axes, colors, gate overlays, and font sizes as my template.

Reading figure template formatting
Generating plots with consistent styling

figures.zipArchive · 18.4 MB

Your research. Your decisions.

"Can I trust Bogi with my research?"

You make every call. Which abstracts to include. Where to draw the gate. What format to use. Bogi just repeats your decision. Nothing ships without your sign-off.

"My workflow is too niche for this."

That's the point. Bogi isn't built for one task. You show it your specific gating strategy, your inclusion criteria, your figure format. It applies your process across everything - even if you're the only lab doing it this way.

"How is this different from ChatGPT?"

ChatGPT answers questions. Bogi does your work. You show Bogi how you gate a sample. It gates the rest. You show it your inclusion criteria. It screens every abstract. ChatGPT can't do any of that.

What would you do with an extra 14 hours this week?

You've already figured out how to do it once. You just need a teammate to do it 300 more times. Book a 15-minute call. Tell us your most tedious task. We'll show you exactly how a teammate handles it.